TMAJ Manual

Overview

Background

• Tissue MicroArray Basics
  

Applications

• SpecimensManager Application
• ArrayBuilder Application
• ArrayManager Application
  
• Import Application
• ImagesManager Application
• Image Analysis
  
• Administrator Application
  

Client Setup

Server Setup

• Prerequisites
  
• How to Setup a TMAJ Server
• Changing the Source Code of TMAJ
  

Database Design

• Schema
  
  • Core Tables: The main tables that make up TMAJ
    
    • Blocks: Patients, Specimens, Blocks, and TissueDiagnoses.  Where the tissue comes from.
      
    • ArrayBlocks: ArrayBlocks, ArraySlides, ArrayCores, Scans, and ArrayImages.  Where the tissue goes.
      
    • Scored Images: Sessions, ArrayImages, and ScoredImages: How users score ArrayImages.
      
  • Dynamic Tables
  • Security Related Tables
  • Miscellaneous Tables
  • Entire Schema Diagram
• Descriptions of fields
  

Information Flow

Javadoc (API)

Frequently Asked Questions (FAQ's)

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