edu.jhu.tmaj.client.importer.images.data
Interface ImageOutputParser

All Known Implementing Classes:

AcisImageOutputParser, AperioImageOutputParser, BlissImageOutputParser, StandardImageOutputParser

public interface ImageOutputParser

An ImageOutputParser parses images output from a system that scans TMA slides, such as Bacus or ChromaVision. A directory represents one ArraySlide. The directoryName gives information (Class DirectoryNameInfo) that allows the system to uniquely identify an ArraySlideID. The jpeg files inside the directories are images from the ArraySlide. Each of the file names for the images contains the X and Y position on the ArraySlide.

Method Summary

Coordinate

getCoordinate(java.lang.String fileName) Gets the Coordinate (x and y position) by parsing the fileName

Method Detail

getCoordinate

Coordinate getCoordinate(java.lang.String fileName)
                         throws java.text.ParseException

Gets the Coordinate (x and y position) by parsing the fileName

Throws:

java.text.ParseException