edu.jhu.tmaj.servlet.request.impl
Class ScoredImageDetailsRequest

java.lang.Object
  edu.jhu.tmaj.servlet.request.BaseRequest
      edu.jhu.tmaj.servlet.request.impl.DetailsRequest
          edu.jhu.tmaj.servlet.request.impl.ScoredImageDetailsRequest

All Implemented Interfaces:

CommandRequest, java.io.Serializable

public final class ScoredImageDetailsRequest
extends DetailsRequest
implements java.io.Serializable

Retrieves information about every x and y position from a session (a scored array) and puts it into a table format (List of Lists). Each row represents a position (example x=2,y=5)

See Also:

Serialized Form

Field Summary

static TableField	ARRAYBLOCKID_FIELD
static TableField	ARRAYIMAGEID_FIELD
static TableField	HAS_DRAWINGS_FIELD
(package private) static org.slf4j.Logger	logger
static TableField	SCORED_IMAGE_ID_FIELD
static TableField	SCOREDIMAGES_INPUT_LOG_FIELD
static TableField	SCOREDIMAGES_NOTES_FIELD
static TableField	SCOREDIMAGES_TISSUETYPEID_FIELD
static TableField	SESSIONID_FIELD
static TableField	SPECIMEN_TYPE_FIELD
static TableField	SPECIMENID_FIELD
static TableField	TD_TYPE_FIELD
static TableField	TISSUEDIAGNOSISID_FIELD
static TableField	X_FIELD
static TableField	Y_FIELD

Fields inherited from class edu.jhu.tmaj.servlet.request.impl.DetailsRequest

userBean

Fields inherited from class edu.jhu.tmaj.servlet.request.BaseRequest

password, username

Constructor Summary

ScoredImageDetailsRequest(int[] sessions, DynamicMetaData specimensDynamicMetaData, DynamicMetaData tissueDiagnosisDynamicMetaData, DynamicMetaData scoredImagesDynamicMetaData, java.util.Map<java.lang.Integer,LookupRecord> specimenTypeID_specimenTypeBean, java.util.Map<java.lang.Integer,LookupRecord> tissueTypeID_tissueTypeBean)
Since this is executed on the server side, the request must pass in the cached MetaData from MyBeans

Method Summary

protected void	doMetaDataQueries() Add Dynamic data from the Specimens,TissueDiagnosis, and ArrayImage sections
protected java.lang.String	getMainQuerySQL() The ScoredImages table can not be included in this query, since some of the spots on the ArraySlide may have not been scored yet, and thus not record in the ScoredImages table would exist.
protected ExpandingMap	getNewExpandingMap()
protected StaticFields	getStaticFields() Returns fields and their table-names from non-dynamic tables.
protected void	lookupStaticValuesInRecord(java.util.Map record) Lookups the TissueType,SpecimenType, and BlockFixationID from their respective tables
protected void	renameFields(java.util.List<TableField> fieldNamesList)
protected java.util.List<java.util.Map>	sortListOfMaps(java.util.List<java.util.Map> listOfMaps) Sorts a List of Maps by the sessionid,y,x fields found in each of the Maps
java.lang.String	toString()
protected void	verifyUser(UserBean userBean) Throws an exception if the user is not allowed to make this Request

Methods inherited from class edu.jhu.tmaj.servlet.request.impl.DetailsRequest

doMetaDataQuery, getExpandingMap, getWarnings, lookupStaticField, processRequest

Methods inherited from class edu.jhu.tmaj.servlet.request.BaseRequest

executeCommand, getPassword, getUsername

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

static final org.slf4j.Logger logger

SCORED_IMAGE_ID_FIELD

public static final TableField SCORED_IMAGE_ID_FIELD

SCOREDIMAGES_TISSUETYPEID_FIELD

public static final TableField SCOREDIMAGES_TISSUETYPEID_FIELD

SCOREDIMAGES_NOTES_FIELD

public static final TableField SCOREDIMAGES_NOTES_FIELD

SCOREDIMAGES_INPUT_LOG_FIELD

public static final TableField SCOREDIMAGES_INPUT_LOG_FIELD

X_FIELD

public static final TableField X_FIELD

Y_FIELD

public static final TableField Y_FIELD

SESSIONID_FIELD

public static final TableField SESSIONID_FIELD

ARRAYIMAGEID_FIELD

public static final TableField ARRAYIMAGEID_FIELD

SPECIMENID_FIELD

public static final TableField SPECIMENID_FIELD

SPECIMEN_TYPE_FIELD

public static final TableField SPECIMEN_TYPE_FIELD

TISSUEDIAGNOSISID_FIELD

public static final TableField TISSUEDIAGNOSISID_FIELD

TD_TYPE_FIELD

public static final TableField TD_TYPE_FIELD

HAS_DRAWINGS_FIELD

public static final TableField HAS_DRAWINGS_FIELD

ARRAYBLOCKID_FIELD

public static final TableField ARRAYBLOCKID_FIELD

Constructor Detail

ScoredImageDetailsRequest

public ScoredImageDetailsRequest(int[] sessions,
                                 DynamicMetaData specimensDynamicMetaData,
                                 DynamicMetaData tissueDiagnosisDynamicMetaData,
                                 DynamicMetaData scoredImagesDynamicMetaData,
                                 java.util.Map<java.lang.Integer,LookupRecord> specimenTypeID_specimenTypeBean,
                                 java.util.Map<java.lang.Integer,LookupRecord> tissueTypeID_tissueTypeBean)

Since this is executed on the server side, the request must pass in the cached MetaData from MyBeans

Method Detail

getNewExpandingMap

protected ExpandingMap getNewExpandingMap()

Specified by:

getNewExpandingMap in class DetailsRequest

verifyUser

protected void verifyUser(UserBean userBean)
                   throws java.sql.SQLException

Description copied from class: DetailsRequest

Throws an exception if the user is not allowed to make this Request

Specified by:

verifyUser in class DetailsRequest

Throws:

java.sql.SQLException

renameFields

protected void renameFields(java.util.List<TableField> fieldNamesList)

Overrides:

renameFields in class DetailsRequest

getStaticFields

protected StaticFields getStaticFields()

Description copied from class: DetailsRequest

Returns fields and their table-names from non-dynamic tables.

Specified by:

getStaticFields in class DetailsRequest

getMainQuerySQL

protected java.lang.String getMainQuerySQL()
                                    throws java.sql.SQLException

The ScoredImages table can not be included in this query, since some of the spots on the ArraySlide may have not been scored yet, and thus not record in the ScoredImages table would exist. If there is no record in the ScoredImages table, the row for that spot will not be displayed. This is why you need the ScoredImageQuery class.

Specified by:

getMainQuerySQL in class DetailsRequest

Throws:

java.sql.SQLException

lookupStaticValuesInRecord

protected void lookupStaticValuesInRecord(java.util.Map record)

Lookups the TissueType,SpecimenType, and BlockFixationID from their respective tables

Specified by:

lookupStaticValuesInRecord in class DetailsRequest

sortListOfMaps

protected java.util.List<java.util.Map> sortListOfMaps(java.util.List<java.util.Map> listOfMaps)

Sorts a List of Maps by the sessionid,y,x fields found in each of the Maps

Specified by:

sortListOfMaps in class DetailsRequest

Parameters:

listOfMaps - the List to be sorted based upon 3 fields found in the Maps

Returns:

a List of Maps sorted by the 3 fields

doMetaDataQueries

protected void doMetaDataQueries()
                          throws java.sql.SQLException

Add Dynamic data from the Specimens,TissueDiagnosis, and ArrayImage sections

Specified by:

doMetaDataQueries in class DetailsRequest

Throws:

java.sql.SQLException

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object