Serialized Form

Package edu.jhu.tmaj.beans

Class edu.jhu.tmaj.beans.AnimalExperimentBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ArrayBlockBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ArrayCoreBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ArrayCoreReferenceBean extends java.lang.Object implements Serializable

Serialized Fields

specimenID_specimenBean

java.util.Map<K,V> specimenID_specimenBean

blockID_blockBean

java.util.Map<K,V> blockID_blockBean

tissueDiagnosisID_tissueDiagnosisBean

java.util.Map<K,V> tissueDiagnosisID_tissueDiagnosisBean

Class edu.jhu.tmaj.beans.ArrayImageBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ArraySlideBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.BlockBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.BlockOrSlideExchangeBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.BlockUsageAltBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.BlockUsageBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.BloodSampleBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.BloodUsageBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.CellLineBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.CellLineExperimentBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.CellLinesReferenceBean extends java.lang.Object implements Serializable

Serialized Fields

cellLineID_cellLineBean

java.util.Map<K,V> cellLineID_cellLineBean

cellLineExperimentID_cellLineExperimentBean

java.util.Map<K,V> cellLineExperimentID_cellLineExperimentBean

tdID_tdBean

java.util.Map<K,V> tdID_tdBean

Class edu.jhu.tmaj.beans.IASessionBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.JBean extends java.lang.Object implements Serializable

Serialized Fields

field_value

java.util.Map<K,V> field_value

userBean

UserBean userBean

staticMetaData

StaticMetaData staticMetaData

Class edu.jhu.tmaj.beans.MachineSessionBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.MolecularSampleBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.MolecularUsageBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.NullBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.PaperBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.PatientBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ProjectBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ProtocolBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.ScanBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.SessionBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.SlideBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.TissueSampleBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.TissueUsageBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.UrineSampleBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.UrineUsageBean extends JBean implements Serializable

Class edu.jhu.tmaj.beans.UserBean extends JBean implements Serializable

Serialized Fields

digestedPassword

java.lang.String digestedPassword

Class edu.jhu.tmaj.beans.UserBeanLimited extends UserBean implements Serializable

Package edu.jhu.tmaj.beans.data

Class edu.jhu.tmaj.beans.data.DatedProjectSession extends java.lang.Object implements Serializable

Serialized Fields

sessionID

int sessionID

projectSessionType

ProjectSessionType projectSessionType

date

java.util.Date date

Class edu.jhu.tmaj.beans.data.ExpandingMap extends java.lang.Object implements Serializable

Serialized Fields

mapList

java.util.List<E> mapList

expandableField_subMap

java.util.Map<K,V> expandableField_subMap

Class edu.jhu.tmaj.beans.data.InternalSecurityException extends java.sql.SQLException implements Serializable

Class edu.jhu.tmaj.beans.data.StaticEnumeration extends java.lang.Object implements Serializable

Serialized Fields

id

int id

value

java.lang.String value

Class edu.jhu.tmaj.beans.data.StaticMetaData extends java.lang.Object implements Serializable

Serialized Fields

columnName_enumerations

java.util.Map<K,V> columnName_enumerations

Package edu.jhu.tmaj.beans.data.datatypes

Class edu.jhu.tmaj.beans.data.datatypes.LookupRecord extends java.lang.Object implements Serializable

Serialized Fields

id

int id

name

java.lang.String name

Package edu.jhu.tmaj.beans.dynamic

Class edu.jhu.tmaj.beans.dynamic.DynamicJBean extends JBean implements Serializable

Serialized Fields

fieldID_dynamicValue

java.util.Map<K,V> fieldID_dynamicValue

A map with FieldIDs from a dynamicTable as the keys; the values are the DynamicValue that the bean has for the field. All Dynamic data is kept in this Map. The dynamic Meta-Data is kept in the dynamicMetaData variable.

dynamicMetaData

DynamicMetaData dynamicMetaData

The DynamicMetaData tells which types have which dynamic fields, and which fields are enumerated.

Class edu.jhu.tmaj.beans.dynamic.ScoredImageBean extends DynamicJBean implements Serializable

Serialized Fields

sessionBean

SessionBean sessionBean

Class edu.jhu.tmaj.beans.dynamic.SpecimenBean extends DynamicJBean implements Serializable

Class edu.jhu.tmaj.beans.dynamic.TissueDiagnosisBean extends DynamicJBean implements Serializable

Package edu.jhu.tmaj.beans.dynamic.data

Class edu.jhu.tmaj.beans.dynamic.data.ArrayImageDynamicField extends DynamicTField implements Serializable

Serialized Fields

scoringStrategyID

int scoringStrategyID

aidfTypeID

ArrayImageDynamicField.AIDynamicFieldType aidfTypeID

Class edu.jhu.tmaj.beans.dynamic.data.ArrayImageDynamicMetaData extends DynamicMetaData implements Serializable

Serialized Fields

scoringStrategyID_dynamicFields

java.util.Map<K,V> scoringStrategyID_dynamicFields

Class edu.jhu.tmaj.beans.dynamic.data.DynamicEnumeration extends java.lang.Object implements Serializable

Serialized Fields

enumID

int enumID

fieldID

int fieldID

name

java.lang.String name

Class edu.jhu.tmaj.beans.dynamic.data.DynamicMetaData extends java.lang.Object implements Serializable

Serialized Fields

id_dynamicField

java.util.Map<K,V> id_dynamicField

id_dynamicEnumeration

java.util.Map<K,V> id_dynamicEnumeration

typeID__dynamicFields

java.util.Map<K,V> typeID__dynamicFields

fieldID__dynamicEnumerations

java.util.Map<K,V> fieldID__dynamicEnumerations

Class edu.jhu.tmaj.beans.dynamic.data.DynamicTField extends DatabaseField implements Serializable

Serialized Fields

fieldID

int fieldID

dynamicTypeID

int dynamicTypeID

Class edu.jhu.tmaj.beans.dynamic.data.DynamicValue extends java.lang.Object implements Serializable

Serialized Fields

enumID

java.lang.Integer enumID

fieldNameValue

java.lang.String fieldNameValue

isEnumerated

boolean isEnumerated

Package edu.jhu.tmaj.beans.exfile

Class edu.jhu.tmaj.beans.exfile.ExternalFile extends java.lang.Object implements Serializable

Serialized Fields

id

int id

externalFolder

ExternalFolder externalFolder

filename

java.lang.String filename

checksum

long checksum

Class edu.jhu.tmaj.beans.exfile.ExternalFolder extends java.lang.Object implements Serializable

Serialized Fields

id

int id

parentExternalFolder

ExternalFolder parentExternalFolder

folderName

java.lang.String folderName

Package edu.jhu.tmaj.beans.exfile.data

Class edu.jhu.tmaj.beans.exfile.data.ExternalFileCoordinate extends java.lang.Object implements Serializable

Serialized Fields

externalFile

ExternalFile externalFile

coordinate

Coordinate coordinate

Package edu.jhu.tmaj.beans.manytomany

Class edu.jhu.tmaj.beans.manytomany.ManyToManyBean extends java.lang.Object implements Serializable

Serialized Fields

linkGroup1

LinkGroup linkGroup1

linkGroup2

LinkGroup linkGroup2

key1Name

java.lang.String key1Name

key2Name

java.lang.String key2Name

tableName

java.lang.String tableName

Class edu.jhu.tmaj.beans.manytomany.PapersSessionsBean extends ManyToManyBean implements Serializable

Class edu.jhu.tmaj.beans.manytomany.ProjectsArraySlidesBean extends ManyToManyBean implements Serializable

Class edu.jhu.tmaj.beans.manytomany.UsersArrayBlocksBean extends ManyToManyBean implements Serializable

Class edu.jhu.tmaj.beans.manytomany.UsersProjectsBean extends ManyToManyBean implements Serializable

Class edu.jhu.tmaj.beans.manytomany.UsersUsersBean extends ManyToManyBean implements Serializable

Package edu.jhu.tmaj.beans.masks

Class edu.jhu.tmaj.beans.masks.AbstractMask extends java.lang.Object implements Serializable

Serialized Fields

id

java.lang.Integer id

maskName

java.lang.String maskName

maskType

MaskType maskType

Package edu.jhu.tmaj.beans.masks.color

Class edu.jhu.tmaj.beans.masks.color.CircleRange extends java.lang.Object implements Serializable

Serialized Fields

startAngle

double startAngle

The angle where the range starts.

endAngle

double endAngle

The angle where the range stops.

isReset

boolean isReset

True if this class has not been "initialized" by adding a point.

numberOfPositions

int numberOfPositions

The numerical range will range from 0 to numberOfPositions, exclusive. the number of positions. If the highest position is 255, (and the range is 0-255), the number of positions is the 256.

Class edu.jhu.tmaj.beans.masks.color.ColorMask extends AbstractMask implements Serializable

Serialized Fields

hsbRange

HsbRange hsbRange

The hsb-range that this color masks includes. Everything else is excluded.

colorMaskID

java.lang.Integer colorMaskID

Class edu.jhu.tmaj.beans.masks.color.HsbRange extends java.lang.Object implements Serializable

Serialized Fields

hueCircleRange

CircleRange hueCircleRange

satRange

SimpleRange satRange

briRange

SimpleRange briRange

Class edu.jhu.tmaj.beans.masks.color.SimpleRange extends java.lang.Object implements Serializable

Serialized Fields

min

int min

max

int max

isReset

boolean isReset

Package edu.jhu.tmaj.beans.masks.filter

Class edu.jhu.tmaj.beans.masks.filter.FilterMask extends AbstractMask implements Serializable

Serialized Fields

inputMask

Mask inputMask

filterMaskID

java.lang.Integer filterMaskID

filterMaskType

FilterMaskType filterMaskType

isMinimumParticleSizeFilterOn

boolean isMinimumParticleSizeFilterOn

isMaximumParticleSizeFilterOn

boolean isMaximumParticleSizeFilterOn

minimumParticleSize

int minimumParticleSize

maximumParticleSize

int maximumParticleSize

iterationCount

int iterationCount

Package edu.jhu.tmaj.beans.masks.lasso

Class edu.jhu.tmaj.beans.masks.lasso.Lasso extends java.lang.Object implements Serializable

Serialized Fields

polygon

java.awt.Polygon polygon

shapeData

float[] shapeData

Class edu.jhu.tmaj.beans.masks.lasso.LassoedFile extends java.lang.Object implements Serializable

Serialized Fields

externalFile

ExternalFile externalFile

lasso

Lasso lasso

isGenericShape

boolean isGenericShape

id

java.lang.Integer id

Class edu.jhu.tmaj.beans.masks.lasso.LassoMask extends AbstractMask implements Serializable

Serialized Fields

externalFile_lassoedFile

java.util.Map<K,V> externalFile_lassoedFile

isAllIncludedInDefault

boolean isAllIncludedInDefault

lassoMaskID

java.lang.Integer lassoMaskID

Package edu.jhu.tmaj.beans.masks.meta

Class edu.jhu.tmaj.beans.masks.meta.ActionMaskInfo extends java.lang.Object implements Serializable

Serialized Fields

referencedMask

Mask referencedMask

isAnded

boolean isAnded

isInverted

boolean isInverted

orderNumber

int orderNumber

id

java.lang.Integer id

Class edu.jhu.tmaj.beans.masks.meta.MetaMask extends AbstractMask implements Serializable

Serialized Fields

actionMaskInfoSet

java.util.Set<E> actionMaskInfoSet

Package edu.jhu.tmaj.beans.masks.results

Class edu.jhu.tmaj.beans.masks.results.AllFileStats extends java.lang.Object implements Serializable

Serialized Fields

file_fileStats

java.util.Map<K,V> file_fileStats

Class edu.jhu.tmaj.beans.masks.results.FileStats extends java.lang.Object implements Serializable

Serialized Fields

totalPixels

int totalPixels

mask_maskStats

java.util.Map<K,V> mask_maskStats

Class edu.jhu.tmaj.beans.masks.results.MaskStats extends java.lang.Object implements Serializable

Serialized Fields

statName_value

java.util.Map<K,V> statName_value

Package edu.jhu.tmaj.beans.misc

Class edu.jhu.tmaj.beans.misc.ArrayCoreRep extends java.lang.Object implements Serializable

Serialized Fields

coordinate

Coordinate coordinate

arrayBlockID

int arrayBlockID

tissueDiagnosisID

int tissueDiagnosisID

controlName

java.lang.String controlName

Class edu.jhu.tmaj.beans.misc.ArrayImageCollectionBean extends java.lang.Object implements Serializable

Serialized Fields

width

int width

height

int height

sessionID

int sessionID

array

ArrayImageCell[][] array

Package edu.jhu.tmaj.client.admin

Class edu.jhu.tmaj.client.admin.ManyToManyPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

key1Bean

JBean key1Bean

key2Bean

JBean key2Bean

label1

java.lang.String label1

label2

java.lang.String label2

manyToManyBean

ManyToManyBean manyToManyBean

reverseButton

javax.swing.JButton reverseButton

manyDataPanel

ManyDataPanel manyDataPanel

mainPanel

javax.swing.JPanel mainPanel

bottomPanel

javax.swing.JPanel bottomPanel

Package edu.jhu.tmaj.client.admin.data

Class edu.jhu.tmaj.client.admin.data.TreeRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable

Package edu.jhu.tmaj.client.arraybuilder

Class edu.jhu.tmaj.client.arraybuilder.CopyArrayBlockDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

sourceLabel

javax.swing.JLabel sourceLabel

destinationLabel

javax.swing.JLabel destinationLabel

sourceComboBox

javax.swing.JComboBox sourceComboBox

destinationComboBox

javax.swing.JComboBox destinationComboBox

buttonPanel

javax.swing.JPanel buttonPanel

mainPanel

javax.swing.JPanel mainPanel

closeButton

javax.swing.JButton closeButton

copyButton

javax.swing.JButton copyButton

Class edu.jhu.tmaj.client.arraybuilder.CoreDataPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

specimenIDLabel

javax.swing.JLabel specimenIDLabel

surgPathNumberLabel

javax.swing.JLabel surgPathNumberLabel

hospitalLabel

javax.swing.JLabel hospitalLabel

specimenTypeLabel

javax.swing.JLabel specimenTypeLabel

blockIDLabel

javax.swing.JLabel blockIDLabel

partLabel

javax.swing.JLabel partLabel

blockDesignationLabel

javax.swing.JLabel blockDesignationLabel

outsideBlockNumberLabel

javax.swing.JLabel outsideBlockNumberLabel

tissueDiagnosisIDLabel

javax.swing.JLabel tissueDiagnosisIDLabel

lesionLetterLabel

javax.swing.JLabel lesionLetterLabel

tissueTypeLabel

javax.swing.JLabel tissueTypeLabel

outsideTDNumberLabel

javax.swing.JLabel outsideTDNumberLabel

cellLineExperimentLabel

javax.swing.JLabel cellLineExperimentLabel

specimenIDTextField

javax.swing.JTextField specimenIDTextField

surgPathNumberTextField

javax.swing.JTextField surgPathNumberTextField

hospitalTextField

javax.swing.JTextField hospitalTextField

specimenTypeTextField

javax.swing.JTextField specimenTypeTextField

blockIDTextField

javax.swing.JTextField blockIDTextField

blockDesignationTextField

javax.swing.JTextField blockDesignationTextField

partTextField

javax.swing.JTextField partTextField

outsideBlockNumberTextField

javax.swing.JTextField outsideBlockNumberTextField

tissueDiagnosisIDTextField

javax.swing.JTextField tissueDiagnosisIDTextField

lesionLetterTextField

javax.swing.JTextField lesionLetterTextField

tissueTypeTextField

javax.swing.JTextField tissueTypeTextField

outsideTDNumberTextField

javax.swing.JTextField outsideTDNumberTextField

cellLineExperimentTextField

javax.swing.JTextField cellLineExperimentTextField

detailsButton

javax.swing.JButton detailsButton

arrayCoreReferenceBean

ArrayCoreReferenceBean arrayCoreReferenceBean

cellLinesReferenceBean

CellLinesReferenceBean cellLinesReferenceBean

arrayBlockFrame

ArrayBlockFrame arrayBlockFrame

Class edu.jhu.tmaj.client.arraybuilder.ExpressEntryDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

patientIDLabel

javax.swing.JLabel patientIDLabel

patientNumberLabel

javax.swing.JLabel patientNumberLabel

hospitalPatientLabel

javax.swing.JLabel hospitalPatientLabel

specimenIDLabel

javax.swing.JLabel specimenIDLabel

surgPathNumberLabel

javax.swing.JLabel surgPathNumberLabel

hospitalSpecimenLabel

javax.swing.JLabel hospitalSpecimenLabel

blockIDLabel

javax.swing.JLabel blockIDLabel

partLabel

javax.swing.JLabel partLabel

blockDesignationLabel

javax.swing.JLabel blockDesignationLabel

tissueDiagnosisIDLabel

javax.swing.JLabel tissueDiagnosisIDLabel

lesionLetterLabel

javax.swing.JLabel lesionLetterLabel

lesionLetterDeterminerLabel

javax.swing.JLabel lesionLetterDeterminerLabel

tissueTypeLabel

javax.swing.JLabel tissueTypeLabel

patientIDTextField

javax.swing.JTextField patientIDTextField

patientNumberTextField

javax.swing.JTextField patientNumberTextField

specimenIDTextField

javax.swing.JTextField specimenIDTextField

surgPathNumberTextField

javax.swing.JTextField surgPathNumberTextField

blockIDTextField

javax.swing.JTextField blockIDTextField

blockDesignationTextField

javax.swing.JTextField blockDesignationTextField

partTextField

javax.swing.JTextField partTextField

tissueDiagnosisIDTextField

javax.swing.JTextField tissueDiagnosisIDTextField

lesionLetterTextField

javax.swing.JTextField lesionLetterTextField

autoAssignRadioButton

javax.swing.JRadioButton autoAssignRadioButton

specifyRadioButton

javax.swing.JRadioButton specifyRadioButton

lesionLetterButtonGroup

javax.swing.ButtonGroup lesionLetterButtonGroup

tissueTypeComboBox

SteppedComboBox tissueTypeComboBox

hospitalPatientComboBox

SteppedComboBox hospitalPatientComboBox

hospitalSpecimenComboBox

SteppedComboBox hospitalSpecimenComboBox

enterButton

javax.swing.JButton enterButton

closeButton

javax.swing.JButton closeButton

inputPanel

javax.swing.JPanel inputPanel

mainPanel

javax.swing.JPanel mainPanel

patientPanel

javax.swing.JPanel patientPanel

specimenPanel

javax.swing.JPanel specimenPanel

blockPanel

javax.swing.JPanel blockPanel

tissueDiagnosisPanel

javax.swing.JPanel tissueDiagnosisPanel

parentFrame

java.awt.Frame parentFrame

Package edu.jhu.tmaj.client.arraybuilder.data

Class edu.jhu.tmaj.client.arraybuilder.data.ArrayCoreRenderer extends AbstractTableCellRenderer implements Serializable

Serialized Fields

useColors

boolean useColors

cellView

CellView cellView

arrayCoreReferenceBean

ArrayCoreReferenceBean arrayCoreReferenceBean

cellLinesReferenceBean

CellLinesReferenceBean cellLinesReferenceBean

tissueTypeColorDelegate

ColorDelegate tissueTypeColorDelegate

organColorDelegate

ColorDelegate organColorDelegate

colorLegend

ColorLegend colorLegend

Package edu.jhu.tmaj.client.image

Class edu.jhu.tmaj.client.image.GridLabel extends javax.swing.JLabel implements Serializable

Serialized Fields

gridEnabled

boolean gridEnabled

gridSpacing

int gridSpacing

Class edu.jhu.tmaj.client.image.PapersDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

paperInputPanel

PaperInputPanel paperInputPanel

closeButton

javax.swing.JButton closeButton

mainPanel

javax.swing.JPanel mainPanel

buttonPanel

javax.swing.JPanel buttonPanel

Class edu.jhu.tmaj.client.image.ShareSessionDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

sessionTextField

javax.swing.JTextField sessionTextField

readLabel

javax.swing.JLabel readLabel

writeLabel

javax.swing.JLabel writeLabel

sessionLabel

javax.swing.JLabel sessionLabel

readScrollPane

javax.swing.JScrollPane readScrollPane

writeScrollPane

javax.swing.JScrollPane writeScrollPane

readListModel

javax.swing.DefaultListModel readListModel

writeListModel

javax.swing.DefaultListModel writeListModel

readList

javax.swing.JList readList

writeList

javax.swing.JList writeList

readPanel

javax.swing.JPanel readPanel

writePanel

javax.swing.JPanel writePanel

northPanel

javax.swing.JPanel northPanel

centerPanel

javax.swing.JPanel centerPanel

southPanel

javax.swing.JPanel southPanel

sessionPanel

javax.swing.JPanel sessionPanel

buttons1Panel

javax.swing.JPanel buttons1Panel

mainPanel

javax.swing.JPanel mainPanel

addButton

javax.swing.JButton addButton

removeButton

javax.swing.JButton removeButton

okayButton

javax.swing.JButton okayButton

cancelButton

javax.swing.JButton cancelButton

addUserDialog

AddUserDialog addUserDialog

sessionBean

SessionBean sessionBean

wasUpdated

boolean wasUpdated

Package edu.jhu.tmaj.client.image.data

Class edu.jhu.tmaj.client.image.data.ArrayImageCell extends java.lang.Object implements Serializable

Serialized Fields

pair

Pair pair

arrayImageID

int arrayImageID

variedSizeImages

VariedSizeImages variedSizeImages

isDisabled

boolean isDisabled

scoreData

ScoreData scoreData

isVisited

boolean isVisited

isSelected

boolean isSelected

isFilteredOut

boolean isFilteredOut

isFilterOn

boolean isFilterOn

isBad

boolean isBad

webSlideURL

java.lang.String webSlideURL

Class edu.jhu.tmaj.client.image.data.ArrayImageRenderer extends AbstractTableCellRenderer implements Serializable

Serialized Fields

useThumbnails

boolean useThumbnails

cache

ArrayImageRendererCache cache

Class edu.jhu.tmaj.client.image.data.ButtonEditor extends javax.swing.AbstractCellEditor implements Serializable

Serialized Fields

button

javax.swing.JButton button

currentValue

java.lang.Object currentValue

Class edu.jhu.tmaj.client.image.data.DividedComboBox extends SteppedComboBox implements Serializable

Serialized Fields

currentItem

java.lang.Object currentItem

Class edu.jhu.tmaj.client.image.data.GroupQueryFrame extends javax.swing.JFrame implements Serializable

Class edu.jhu.tmaj.client.image.data.HeaderTableScrollPane extends javax.swing.JScrollPane implements Serializable

Serialized Fields

rowHeaderList

RowHeaderList rowHeaderList

Class edu.jhu.tmaj.client.image.data.LookedUpDynamicEnumeration extends DynamicEnumeration implements Serializable

Class edu.jhu.tmaj.client.image.data.LookedUpTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class edu.jhu.tmaj.client.image.data.NoArrayImageException extends java.lang.Exception implements Serializable

Class edu.jhu.tmaj.client.image.data.RecentComboBox extends DividedComboBox implements Serializable

Serialized Fields

recentList

java.util.List<E> recentList

allList

java.util.List<E> allList

Class edu.jhu.tmaj.client.image.data.ScoreData extends java.lang.Object implements Serializable

Serialized Fields

isTyped

boolean isTyped

isDiagnosed

boolean isDiagnosed

isOtherScored

boolean isOtherScored

Class edu.jhu.tmaj.client.image.data.SteppedComboBox extends javax.swing.JComboBox implements Serializable

Serialized Fields

popupWidth

int popupWidth

Class edu.jhu.tmaj.client.image.data.SubTableSection extends java.lang.Object implements Serializable

Serialized Fields

mainTableSection

MainTableSection mainTableSection

subSectionName

java.lang.String subSectionName

Class edu.jhu.tmaj.client.image.data.TableField extends java.lang.Object implements Serializable

Serialized Fields

databaseField

DatabaseField databaseField

tableSection

TableSection tableSection

Class edu.jhu.tmaj.client.image.data.TableFieldRenderer extends AbstractTableCellRenderer implements Serializable

Class edu.jhu.tmaj.client.image.data.UserPermission extends java.lang.Object implements Serializable

Serialized Fields

userID

int userID

permissionType

UserPermission.PermissionType permissionType

Class edu.jhu.tmaj.client.image.data.VariedSizeImages extends java.lang.Object implements Serializable

Serialized Fields

largeFile

ExternalFile largeFile

smallFile

ExternalFile smallFile

midFile

ExternalFile midFile

thumbFile

ExternalFile thumbFile

Package edu.jhu.tmaj.client.image.draw

Class edu.jhu.tmaj.client.image.draw.AbstractDrawable extends java.lang.Object implements Serializable

Serialized Fields

isCompleted

boolean isCompleted

shapeID

int shapeID

status

DrawableStatus status

Class edu.jhu.tmaj.client.image.draw.ArrowDrawable extends LineDrawable implements Serializable

Class edu.jhu.tmaj.client.image.draw.DrawableLabel extends GridLabel implements Serializable

Serialized Fields

drawablesList

java.util.List<E> drawablesList

isActive

boolean isActive

Class edu.jhu.tmaj.client.image.draw.FreeHandDrawable extends AbstractDrawable implements Serializable

Serialized Fields

polygon

java.awt.Polygon polygon

Class edu.jhu.tmaj.client.image.draw.LineDrawable extends AbstractDrawable implements Serializable

Serialized Fields

x1

int x1

y1

int y1

x2

int x2

y2

int y2

Class edu.jhu.tmaj.client.image.draw.OvalDrawable extends RectangleDrawable implements Serializable

Class edu.jhu.tmaj.client.image.draw.PolygonDrawable extends AbstractDrawable implements Serializable

Serialized Fields

polygon

java.awt.Polygon polygon

Class edu.jhu.tmaj.client.image.draw.RectangleDrawable extends AbstractDrawable implements Serializable

Serialized Fields

x

int x

y

int y

width

int width

height

int height

Class edu.jhu.tmaj.client.image.draw.ShapeRecord extends java.lang.Object implements Serializable

Serialized Fields

shapeID

int shapeID

x

int x

y

int y

x2

int x2

y2

int y2

width

int width

height

int height

textDisplay

java.lang.String textDisplay

pointsList

java.lang.String pointsList

type

java.lang.String type

Class edu.jhu.tmaj.client.image.draw.ShapesFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

lineRadioButton

javax.swing.JRadioButton lineRadioButton

rectangleRadioButton

javax.swing.JRadioButton rectangleRadioButton

ovalRadioButton

javax.swing.JRadioButton ovalRadioButton

textRadioButton

javax.swing.JRadioButton textRadioButton

polygonRadioButton

javax.swing.JRadioButton polygonRadioButton

arrowRadioButton

javax.swing.JRadioButton arrowRadioButton

selectRadioButton

javax.swing.JRadioButton selectRadioButton

freeHandRadioButton

javax.swing.JRadioButton freeHandRadioButton

newShapeButton

javax.swing.JButton newShapeButton

clearAllButton

javax.swing.JButton clearAllButton

mainPanel

javax.swing.JPanel mainPanel

drawableLabel

DrawableLabel drawableLabel

shapeListener

ShapeListener shapeListener

labelFocusMouseListener

LabelFocusMouseListener labelFocusMouseListener

isActive

boolean isActive

Class edu.jhu.tmaj.client.image.draw.TextDrawable extends AbstractDrawable implements Serializable

Serialized Fields

textStringBuffer

java.lang.StringBuffer textStringBuffer

x

int x

y

int y

Package edu.jhu.tmaj.client.importer.images.data

Class edu.jhu.tmaj.client.importer.images.data.ArrayImage2 extends java.lang.Object implements Serializable

Serialized Fields

arrayCoreID

int arrayCoreID

scanID

int scanID

largeSizeFile

ExternalFile largeSizeFile

smallSizeFile

ExternalFile smallSizeFile

midSizeFile

ExternalFile midSizeFile

thumbSizeFile

ExternalFile thumbSizeFile

Class edu.jhu.tmaj.client.importer.images.data.ArrayImageU extends java.lang.Object implements Serializable

Serialized Fields

arrayCoreID

int arrayCoreID

scanID

int scanID

directoryName

java.lang.String directoryName

fileName

java.lang.String fileName

Class edu.jhu.tmaj.client.importer.images.data.FileCoordinate extends java.lang.Object implements Serializable

Serialized Fields

file

java.io.File file

coordinate

Coordinate coordinate

Class edu.jhu.tmaj.client.importer.images.data.FilenameData extends java.lang.Object implements Serializable

Serialized Fields

filename

java.lang.String filename

arrayBlockID

int arrayBlockID

cutNumber

int cutNumber

scanNumber

int scanNumber

stain

java.lang.String stain

scanningMachine

ScanningMachine scanningMachine

barCode

java.lang.String barCode

extraInformation

java.lang.String extraInformation

Class edu.jhu.tmaj.client.importer.images.data.SelectedScan extends java.lang.Object implements Serializable

Serialized Fields

arrayBlockBean

ArrayBlockBean arrayBlockBean

arraySlideBean

ArraySlideBean arraySlideBean

scanBean

ScanBean scanBean

Package edu.jhu.tmaj.client.importer.specimens.data

Class edu.jhu.tmaj.client.importer.specimens.data.DynamicTranslatedTable extends TranslatedTable implements Serializable

Serialized Fields

fieldID_dynamicValue

java.util.Map<K,V> fieldID_dynamicValue

Class edu.jhu.tmaj.client.importer.specimens.data.MetaDataConverter extends java.lang.Object implements Serializable

Serialized Fields

fieldID__value_enumID

java.util.Map<K,V> fieldID__value_enumID

dynamicMetaData

DynamicMetaData dynamicMetaData

Class edu.jhu.tmaj.client.importer.specimens.data.PatientTranslatedTable extends TranslatedTable implements Serializable

Class edu.jhu.tmaj.client.importer.specimens.data.RecordIdentifier extends java.lang.Object implements Serializable

Serialized Fields

hospitalID

int hospitalID

number

java.lang.String number

Class edu.jhu.tmaj.client.importer.specimens.data.SpecimenTranslatedTable extends DynamicTranslatedTable implements Serializable

Serialized Fields

metaDataConverter

MetaDataConverter metaDataConverter

Class edu.jhu.tmaj.client.importer.specimens.data.TranslatedRow extends java.lang.Object implements Serializable

Serialized Fields

patientTranslatedTable

PatientTranslatedTable patientTranslatedTable

specimenTranslatedTable

SpecimenTranslatedTable specimenTranslatedTable

metaDataConverter

MetaDataConverter metaDataConverter

Class edu.jhu.tmaj.client.importer.specimens.data.TranslatedTable extends java.lang.Object implements Serializable

Serialized Fields

column_value

java.util.Map<K,V> column_value

tableName

java.lang.String tableName

primaryKeyName

java.lang.String primaryKeyName

recordExists

boolean recordExists

primaryKeyID

int primaryKeyID

Package edu.jhu.tmaj.client.specimens

Class edu.jhu.tmaj.client.specimens.AssignSpecimensDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

specimenIDs

int[] specimenIDs

usersComboBox

javax.swing.JComboBox usersComboBox

assignButton

javax.swing.JButton assignButton

cancelButton

javax.swing.JButton cancelButton

mainPanel

javax.swing.JPanel mainPanel

buttonPanel

javax.swing.JPanel buttonPanel

centerPanel

javax.swing.JPanel centerPanel

userLabel

javax.swing.JLabel userLabel

Class edu.jhu.tmaj.client.specimens.SpecimenSingleInputPanel extends SingleInputPanel implements Serializable

Serialized Fields

diagnosisTextArea

javax.swing.JTextArea diagnosisTextArea

grossDescriptionTextArea

javax.swing.JTextArea grossDescriptionTextArea

diagnosisTextAreaScrollPane

javax.swing.JScrollPane diagnosisTextAreaScrollPane

grossDescriptionTextAreaScrollPane

javax.swing.JScrollPane grossDescriptionTextAreaScrollPane

Package edu.jhu.tmaj.client.tables

Class edu.jhu.tmaj.client.tables.SingleInputPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

previousButton

javax.swing.JButton previousButton

nextButton

javax.swing.JButton nextButton

beginningButton

javax.swing.JButton beginningButton

endButton

javax.swing.JButton endButton

controlPanel

javax.swing.JPanel controlPanel

columnWidthData

ColumnWidthData columnWidthData

singleTableScrollPane

javax.swing.JScrollPane singleTableScrollPane

singleTable

HorizontalTable singleTable

singleTableModel

GeneralTableModel singleTableModel

normalScrollPane

javax.swing.JScrollPane normalScrollPane

normalTable

javax.swing.JTable normalTable

normalTableModel

GeneralTableModel normalTableModel

index

int index

Package edu.jhu.tmaj.client.tables.data

Class edu.jhu.tmaj.client.tables.data.BeanTableModel extends GeneralTableModel implements Serializable

Serialized Fields

changedCells

ChangedCells changedCells

isEditingDisabled

boolean isEditingDisabled

Class edu.jhu.tmaj.client.tables.data.ColorTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class edu.jhu.tmaj.client.tables.data.DynamicTableModel extends BeanTableModel implements Serializable

Serialized Fields

typeColumnIndex

int typeColumnIndex

typeFieldName

java.lang.String typeFieldName

Class edu.jhu.tmaj.client.tables.data.GeneralTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

listOfLists

java.util.List<E> listOfLists

columnIdentifiers

java.util.List<E> columnIdentifiers

Class edu.jhu.tmaj.client.tables.data.HeaderTableCellRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Class edu.jhu.tmaj.client.tables.data.HorizontalTable extends javax.swing.JTable implements Serializable

Serialized Fields

rowNumber_defaultCellEditor

java.util.Map<K,V> rowNumber_defaultCellEditor

Class edu.jhu.tmaj.client.tables.data.IntegerCellRenderer extends javax.swing.table.DefaultTableCellRenderer.UIResource implements Serializable

Class edu.jhu.tmaj.client.tables.data.Search extends java.lang.Object implements Serializable

Serialized Fields

isGeneric

boolean isGeneric

dynamicTypeID

int dynamicTypeID

searchTerm

SearchTerm searchTerm

searchTerm2

SearchTerm searchTerm2

value

java.lang.String value

value2

java.lang.String value2

requested2ColumnIdentifiers

java.util.List<E> requested2ColumnIdentifiers

Class edu.jhu.tmaj.client.tables.data.SearchTerm extends java.lang.Object implements Serializable

Serialized Fields

tableName

java.lang.String tableName

fieldName

java.lang.String fieldName

field

DatabaseField field

Class edu.jhu.tmaj.client.tables.data.StandardizedCellEditor extends javax.swing.DefaultCellEditor implements Serializable

Serialized Fields

argTypes

java.lang.Class<T>[] argTypes

constructor

java.lang.reflect.Constructor<T> constructor

value

java.lang.Object value

Package edu.jhu.tmaj.client.tables.logs

Class edu.jhu.tmaj.client.tables.logs.HistoryDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

scrollPane

javax.swing.JScrollPane scrollPane

table

javax.swing.JTable table

tableModel

GeneralTableModel tableModel

sortFilterDialog

SortFilterDialog sortFilterDialog

mainPanel

javax.swing.JPanel mainPanel

buttonPanel

javax.swing.JPanel buttonPanel

closeButton

javax.swing.JButton closeButton

Package edu.jhu.tmaj.database.data

Class edu.jhu.tmaj.database.data.DatabaseField extends java.lang.Object implements Serializable

Serialized Fields

fieldName

java.lang.String fieldName

dataType

DatabaseFieldType dataType

isRequired

boolean isRequired

Package edu.jhu.tmaj.servlet

Class edu.jhu.tmaj.servlet.CommandServlet extends javax.servlet.http.HttpServlet implements Serializable

Package edu.jhu.tmaj.servlet.request

Class edu.jhu.tmaj.servlet.request.BaseRequest extends java.lang.Object implements Serializable

Serialized Fields

username

java.lang.String username

password

java.lang.String password

Package edu.jhu.tmaj.servlet.request.impl

Class edu.jhu.tmaj.servlet.request.impl.ArrayCoreDetailsRequest extends DetailsRequest implements Serializable

Serialized Fields

arrayBlockIDs

java.util.Set<E> arrayBlockIDs

specimenDynamicMetaData

DynamicMetaData specimenDynamicMetaData

tissueDiagnosisDynamicMetaData

DynamicMetaData tissueDiagnosisDynamicMetaData

specimenTypeID_specimenTypeBean

java.util.Map<K,V> specimenTypeID_specimenTypeBean

tissueTypeID_tissueTypeBean

java.util.Map<K,V> tissueTypeID_tissueTypeBean

Class edu.jhu.tmaj.servlet.request.impl.ArrayCoreReferenceRequest extends BaseRequest implements Serializable

Serialized Fields

referenceRequestType

ArrayCoreReferenceRequest.ReferenceRequestType referenceRequestType

id

int id

Class edu.jhu.tmaj.servlet.request.impl.ArrayCoresOpenRequest extends BaseRequest implements Serializable

Serialized Fields

arrayBlockID

int arrayBlockID

Class edu.jhu.tmaj.servlet.request.impl.ArrayCoresSaveRequest extends BaseRequest implements Serializable

Serialized Fields

beansList

java.util.List<E> beansList

arrayBlockID

int arrayBlockID

Class edu.jhu.tmaj.servlet.request.impl.ArrayImageAddRequest extends BaseRequest implements Serializable

Serialized Fields

arrayImage

ArrayImage2 arrayImage

Class edu.jhu.tmaj.servlet.request.impl.ArrayImageCollectionRequest extends BaseRequest implements Serializable

Serialized Fields

sessionID

int sessionID

Class edu.jhu.tmaj.servlet.request.impl.ArrayImageCoresRequest extends BaseRequest implements Serializable

Serialized Fields

arrayBlockBean

ArrayBlockBean arrayBlockBean

Class edu.jhu.tmaj.servlet.request.impl.BadImagesUpdateRequest extends BaseRequest implements Serializable

Serialized Fields

arrayImageCollectionBean

ArrayImageCollectionBean arrayImageCollectionBean

Class edu.jhu.tmaj.servlet.request.impl.CellLinesReferenceRequest extends BaseRequest implements Serializable

Serialized Fields

referenceRequestType

CellLinesReferenceRequest.ReferenceRequestType referenceRequestType

id

int id

Class edu.jhu.tmaj.servlet.request.impl.ChangeLogsSaveRequest extends BaseRequest implements Serializable

Serialized Fields

changeLogList

java.util.List<E> changeLogList

Class edu.jhu.tmaj.servlet.request.impl.ChangePasswordRequest extends BaseRequest implements Serializable

Serialized Fields

userID

int userID

newPassword

java.lang.String newPassword

Class edu.jhu.tmaj.servlet.request.impl.CheckIfSpecimenExistsRequest extends BaseRequest implements Serializable

Serialized Fields

surgPathNumber

java.lang.String surgPathNumber

hospitalID

int hospitalID

blockDesignation

java.lang.String blockDesignation

partNumber

java.lang.String partNumber

lesionLetter

java.lang.String lesionLetter

Class edu.jhu.tmaj.servlet.request.impl.CopyArrayBlockRequest extends BaseRequest implements Serializable

Serialized Fields

sourceArrayBlockID

int sourceArrayBlockID

destinationArrayBlockID

int destinationArrayBlockID

Class edu.jhu.tmaj.servlet.request.impl.CopySessionRequest extends BaseRequest implements Serializable

Serialized Fields

sourceSessionID

int sourceSessionID

destinationSessionID

int destinationSessionID

Class edu.jhu.tmaj.servlet.request.impl.DetailsRequest extends BaseRequest implements Serializable

Serialized Fields

expandingMap

ExpandingMap expandingMap

warningsMessages

Messages warningsMessages

userBean

UserBean userBean

Class edu.jhu.tmaj.servlet.request.impl.DiagnosisLookupRequest extends BaseRequest implements Serializable

Serialized Fields

arrayImageID

int arrayImageID

diagnosisLookupResponse

DiagnosisLookupResponse diagnosisLookupResponse

Class edu.jhu.tmaj.servlet.request.impl.DynamicMetaDataRequest extends BaseRequest implements Serializable

Serialized Fields

fieldsTable

FieldsTable fieldsTable

enumsTable

DynamicEnumsTable enumsTable

Class edu.jhu.tmaj.servlet.request.impl.EnumerationsRequest extends BaseRequest implements Serializable

Serialized Fields

enumerationGroup

EnumerationGroup enumerationGroup

Class edu.jhu.tmaj.servlet.request.impl.ExpressEntryRequest extends BaseRequest implements Serializable

Serialized Fields

specimenTypeID

int specimenTypeID

tissueTypeID

int tissueTypeID

patientHospitalID

int patientHospitalID

specimenHospitalID

int specimenHospitalID

patientNumber

java.lang.String patientNumber

surgPathNumber

java.lang.String surgPathNumber

blockDesignation

java.lang.String blockDesignation

part

java.lang.String part

lesionLetter

java.lang.String lesionLetter

isLesionLetterSpecified

boolean isLesionLetterSpecified

Class edu.jhu.tmaj.servlet.request.impl.FileChecksumRequest extends BaseRequest implements Serializable

Serialized Fields

externalFile

ExternalFile externalFile

fileUtil

FileUtil fileUtil

checksumUtil

ChecksumUtil checksumUtil

Class edu.jhu.tmaj.servlet.request.impl.FileDeleteRequest extends BaseRequest implements Serializable

Serialized Fields

externalFile

ExternalFile externalFile

Class edu.jhu.tmaj.servlet.request.impl.FileDownloadRequest extends BaseRequest implements Serializable

Serialized Fields

externalFile

ExternalFile externalFile

fileUtil

FileUtil fileUtil

Class edu.jhu.tmaj.servlet.request.impl.FilesGetRequest extends BaseRequest implements Serializable

Serialized Fields

externalFolder

ExternalFolder externalFolder

Class edu.jhu.tmaj.servlet.request.impl.FilesLargeGetRequest extends BaseRequest implements Serializable

Serialized Fields

scanID

int scanID

Class edu.jhu.tmaj.servlet.request.impl.FileUploadRequest extends BaseRequest implements Serializable

Serialized Fields

externalFolder

ExternalFolder externalFolder

filename

java.lang.String filename

bytes

byte[] bytes

fileUtil

FileUtil fileUtil

Class edu.jhu.tmaj.servlet.request.impl.FolderCheckRequest extends BaseRequest implements Serializable

Serialized Fields

externalFolder

ExternalFolder externalFolder

Class edu.jhu.tmaj.servlet.request.impl.FolderCreateRequest extends BaseRequest implements Serializable

Serialized Fields

folderName

java.lang.String folderName

parentExternalFolder

ExternalFolder parentExternalFolder

Class edu.jhu.tmaj.servlet.request.impl.FolderDeleteRequest extends BaseRequest implements Serializable

Serialized Fields

folder

ExternalFolder folder

Class edu.jhu.tmaj.servlet.request.impl.FolderGetRequest extends BaseRequest implements Serializable

Serialized Fields

parentExternalFolder

ExternalFolder parentExternalFolder

Class edu.jhu.tmaj.servlet.request.impl.GrossDescriptionRequest extends BaseRequest implements Serializable

Serialized Fields

specimenID

int specimenID

Class edu.jhu.tmaj.servlet.request.impl.GrossDescriptionWipeRequest extends BaseRequest implements Serializable

Serialized Fields

totalChecked

int totalChecked

totalUpdated

int totalUpdated

Class edu.jhu.tmaj.servlet.request.impl.HistoryRequest extends BaseRequest implements Serializable

Serialized Fields

tableNumber

int tableNumber

primaryKeyID

int primaryKeyID

Class edu.jhu.tmaj.servlet.request.impl.ImageInfoRequest extends BaseRequest implements Serializable

Serialized Fields

arrayImageID

int arrayImageID

infoStringBuffer

java.lang.StringBuffer infoStringBuffer

Class edu.jhu.tmaj.servlet.request.impl.InitDatabaseRequest extends java.lang.Object implements Serializable

Serialized Fields

messageStringBuilder

java.lang.StringBuilder messageStringBuilder

wereDatabaseChangesMade

boolean wereDatabaseChangesMade

Class edu.jhu.tmaj.servlet.request.impl.InvalidateMachineScoresRequest extends BaseRequest implements Serializable

Serialized Fields

machineScoreIDsList

java.util.List<E> machineScoreIDsList

isInvalid

boolean isInvalid

Class edu.jhu.tmaj.servlet.request.impl.IsArrayBlockBlankRequest extends BaseRequest implements Serializable

Serialized Fields

arrayBlockID

int arrayBlockID

Class edu.jhu.tmaj.servlet.request.impl.KeyValueGetRequest extends BaseRequest implements Serializable

Serialized Fields

key

KeyValueGetRequest.KeyName key

Class edu.jhu.tmaj.servlet.request.impl.KeyValueSetRequest extends BaseRequest implements Serializable

Serialized Fields

key

KeyValueGetRequest.KeyName key

value

java.lang.String value

Class edu.jhu.tmaj.servlet.request.impl.LoginRequest extends BaseRequest implements Serializable

Class edu.jhu.tmaj.servlet.request.impl.LogoutRequest extends BaseRequest implements Serializable

Class edu.jhu.tmaj.servlet.request.impl.LookupTableRequest extends BaseRequest implements Serializable

Serialized Fields

lookupTable

LookupTable lookupTable

Class edu.jhu.tmaj.servlet.request.impl.MachineScoresImportRequest extends BaseRequest implements Serializable

Serialized Fields

filenameData

FilenameData filenameData

listOfStrings

java.util.List<E> listOfStrings

Class edu.jhu.tmaj.servlet.request.impl.MachineScoresInfoRequest extends BaseRequest implements Serializable

Serialized Fields

arrayImageID

int arrayImageID

Class edu.jhu.tmaj.servlet.request.impl.ManyToManyTableRequest extends BaseRequest implements Serializable

Serialized Fields

manyToManyBean

ManyToManyBean manyToManyBean

isFull

boolean isFull

Class edu.jhu.tmaj.servlet.request.impl.ManyToManyUpdateRequest extends BaseRequest implements Serializable

Serialized Fields

manyToManyBean

ManyToManyBean manyToManyBean

key

int key

keySet

java.util.Set<E> keySet

fullKeySet

java.util.Set<E> fullKeySet

isReversed

boolean isReversed

Class edu.jhu.tmaj.servlet.request.impl.MaskReadRequest extends BaseRequest implements Serializable

Serialized Fields

iaSessionID

int iaSessionID

Class edu.jhu.tmaj.servlet.request.impl.MaskStatsWriteRequest extends BaseRequest implements Serializable

Serialized Fields

allFileStats

AllFileStats allFileStats

Class edu.jhu.tmaj.servlet.request.impl.MasksWriteRequest extends BaseRequest implements Serializable

Serialized Fields

maskList

java.util.List<E> maskList

iaSessionID

int iaSessionID

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAddRequest extends BaseRequest implements Serializable

Serialized Fields

addOperation

MetaDataAddRequest.AddOperation addOperation

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAddRequest.EnumAdd extends java.lang.Object implements Serializable

Serialized Fields

enumsTable

DynamicEnumsTable enumsTable

fieldID

int fieldID

name

java.lang.String name

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAddRequest.FieldAdd extends java.lang.Object implements Serializable

Serialized Fields

fieldsTable

FieldsTable fieldsTable

typeID

int typeID

name

java.lang.String name

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAddRequest.TypeAdd extends java.lang.Object implements Serializable

Serialized Fields

typesTable

TypesTable typesTable

name

java.lang.String name

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAlterRequest extends BaseRequest implements Serializable

Serialized Fields

alterOperation

MetaDataAlterRequest.AlterOperation alterOperation

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAlterRequest.DeleteOperation extends java.lang.Object implements Serializable

Serialized Fields

nameTable

NameTable nameTable

primaryKeyID

int primaryKeyID

Class edu.jhu.tmaj.servlet.request.impl.MetaDataAlterRequest.ModifyOperation extends java.lang.Object implements Serializable

Serialized Fields

nameTable

NameTable nameTable

primaryKeyID

int primaryKeyID

newName

java.lang.String newName

Class edu.jhu.tmaj.servlet.request.impl.OriginalTypeRequest extends BaseRequest implements Serializable

Serialized Fields

arrayImageID

int arrayImageID

Class edu.jhu.tmaj.servlet.request.impl.ProjectsArraySlidesAddRequest extends BaseRequest implements Serializable

Serialized Fields

projectID

int projectID

arraySlideID

int arraySlideID

Class edu.jhu.tmaj.servlet.request.impl.QuantityLeftRequest extends BaseRequest implements Serializable

Serialized Fields

sampleID

int sampleID

samplesBean

JBean samplesBean

sampleUsagesBean

JBean sampleUsagesBean

Class edu.jhu.tmaj.servlet.request.impl.RecentSessionDeleteRequest extends BaseRequest implements Serializable

Class edu.jhu.tmaj.servlet.request.impl.RecentSessionGetRequest extends BaseRequest implements Serializable

Class edu.jhu.tmaj.servlet.request.impl.RecentSessionUpdateRequest extends BaseRequest implements Serializable

Serialized Fields

sessionID

int sessionID

projectSessionType

ProjectSessionType projectSessionType

Class edu.jhu.tmaj.servlet.request.impl.ScanCheckDataRequest extends BaseRequest implements Serializable

Serialized Fields

selectedScan

SelectedScan selectedScan

Class edu.jhu.tmaj.servlet.request.impl.ScanDeleteRequest extends BaseRequest implements Serializable

Serialized Fields

selectedScan

SelectedScan selectedScan

Class edu.jhu.tmaj.servlet.request.impl.ScoredImageDetailsRequest extends DetailsRequest implements Serializable

Serialized Fields

sessions

int[] sessions

specimensDynamicMetaData

DynamicMetaData specimensDynamicMetaData

tissueDiagnosisDynamicMetaData

DynamicMetaData tissueDiagnosisDynamicMetaData

scoredImagesDynamicMetaData

DynamicMetaData scoredImagesDynamicMetaData

specimenTypeID_specimenTypeBean

java.util.Map<K,V> specimenTypeID_specimenTypeBean

tissueTypeID_tissueTypeBean

java.util.Map<K,V> tissueTypeID_tissueTypeBean

isAnySessionOfAProjectWithLookupDisabled

boolean isAnySessionOfAProjectWithLookupDisabled

Class edu.jhu.tmaj.servlet.request.impl.SelectRequest extends BaseRequest implements Serializable

Serialized Fields

bean

JBean bean

search

Search search

Class edu.jhu.tmaj.servlet.request.impl.SessionDescriptionsRequest extends BaseRequest implements Serializable

Class edu.jhu.tmaj.servlet.request.impl.ShapesLoadRequest extends BaseRequest implements Serializable

Serialized Fields

scoredImageID

int scoredImageID

Class edu.jhu.tmaj.servlet.request.impl.ShapesSaveRequest extends BaseRequest implements Serializable

Serialized Fields

scoredImageID

int scoredImageID

drawablesList

java.util.List<E> drawablesList

Class edu.jhu.tmaj.servlet.request.impl.SpecimenIdentifiersRequest extends BaseRequest implements Serializable

Class edu.jhu.tmaj.servlet.request.impl.SpecimensAssignRequest extends BaseRequest implements Serializable

Serialized Fields

userID

int userID

specimenIDs

int[] specimenIDs

Class edu.jhu.tmaj.servlet.request.impl.SurgPathNumberRequest extends BaseRequest implements Serializable

Serialized Fields

tableType

SurgPathNumberRequest.TableType tableType

foreignKeyID

int foreignKeyID

Class edu.jhu.tmaj.servlet.request.impl.TranslatedRowRequest extends BaseRequest implements Serializable

Serialized Fields

translatedRow

TranslatedRow translatedRow

Class edu.jhu.tmaj.servlet.request.impl.UpdateRequest extends BaseRequest implements Serializable

Serialized Fields

bean

JBean bean

requestType

UpdateRequestType requestType

Class edu.jhu.tmaj.servlet.request.impl.UsedTissueTypesRequest extends BaseRequest implements Serializable

Serialized Fields

sessionID

int sessionID

Class edu.jhu.tmaj.servlet.request.impl.UsersSessionsGetRequest extends BaseRequest implements Serializable

Serialized Fields

sessionID

int sessionID

Class edu.jhu.tmaj.servlet.request.impl.UsersSessionsSaveRequest extends BaseRequest implements Serializable

Serialized Fields

sessionID

int sessionID

newUserPermissionsList

java.util.List<E> newUserPermissionsList

Package edu.jhu.tmaj.servlet.response

Class edu.jhu.tmaj.servlet.response.ErrorResponse extends java.lang.Object implements Serializable

Serialized Fields

errorMessage

java.lang.String errorMessage

Class edu.jhu.tmaj.servlet.response.SuccessResponse extends java.lang.Object implements Serializable

Package edu.jhu.tmaj.servlet.response.impl

Class edu.jhu.tmaj.servlet.response.impl.ArrayCoreReferenceResponse extends SuccessResponse implements Serializable

Serialized Fields

arrayCoreReferenceBean

ArrayCoreReferenceBean arrayCoreReferenceBean

Class edu.jhu.tmaj.servlet.response.impl.ArrayCoresGetResponse extends SuccessResponse implements Serializable

Serialized Fields

beanList

java.util.List<E> beanList

Class edu.jhu.tmaj.servlet.response.impl.ArrayImageCollectionResponse extends SuccessResponse implements Serializable

Serialized Fields

arrayImageCollectionBean

ArrayImageCollectionBean arrayImageCollectionBean

Class edu.jhu.tmaj.servlet.response.impl.ArrayImageCoresResponse extends SuccessResponse implements Serializable

Serialized Fields

coordinate_arrayCoreID

java.util.Map<K,V> coordinate_arrayCoreID

Class edu.jhu.tmaj.servlet.response.impl.CellLinesReferenceResponse extends SuccessResponse implements Serializable

Serialized Fields

cellLinesReferenceBean

CellLinesReferenceBean cellLinesReferenceBean

Class edu.jhu.tmaj.servlet.response.impl.CheckIfSpecimenExistsResponse extends SuccessResponse implements Serializable

Serialized Fields

isSpecimenInDatabase

boolean isSpecimenInDatabase

isTissueDiagnosisInDatabase

boolean isTissueDiagnosisInDatabase

Class edu.jhu.tmaj.servlet.response.impl.DetailsResponse extends SuccessResponse implements Serializable

Serialized Fields

fieldNamesList

java.util.List<E> fieldNamesList

listOfLists

java.util.List<E> listOfLists

warningsString

java.lang.String warningsString

warningsWereGenerated

boolean warningsWereGenerated

Class edu.jhu.tmaj.servlet.response.impl.DiagnosisLookupResponse extends SuccessResponse implements Serializable

Serialized Fields

arrayImageFieldID

int arrayImageFieldID

arrayImageEnumID

int arrayImageEnumID

failed

boolean failed

failureMessage

java.lang.String failureMessage

Class edu.jhu.tmaj.servlet.response.impl.DynamicMetaDataResponse extends SuccessResponse implements Serializable

Serialized Fields

dynamicMetaData

DynamicMetaData dynamicMetaData

Class edu.jhu.tmaj.servlet.response.impl.EnumerationsResponse extends SuccessResponse implements Serializable

Serialized Fields

staticEnumerationList

java.util.List<E> staticEnumerationList

Class edu.jhu.tmaj.servlet.response.impl.ExpressEntryResponse extends SuccessResponse implements Serializable

Serialized Fields

patientID

int patientID

specimenID

int specimenID

blockID

int blockID

tissueDiagnosisID

int tissueDiagnosisID

Class edu.jhu.tmaj.servlet.response.impl.ExternalFileCoordinateResponse extends SuccessResponse implements Serializable

Serialized Fields

externalFileCoordinateList

java.util.List<E> externalFileCoordinateList

Class edu.jhu.tmaj.servlet.response.impl.FileChecksumResponse extends SuccessResponse implements Serializable

Serialized Fields

checksum

java.lang.Long checksum

fileExists

boolean fileExists

Class edu.jhu.tmaj.servlet.response.impl.FileDownloadResponse extends SuccessResponse implements Serializable

Serialized Fields

bytes

byte[] bytes

Class edu.jhu.tmaj.servlet.response.impl.FileResponse extends SuccessResponse implements Serializable

Serialized Fields

externalFile

ExternalFile externalFile

Class edu.jhu.tmaj.servlet.response.impl.FilesResponse extends SuccessResponse implements Serializable

Serialized Fields

externalFilesList

java.util.List<E> externalFilesList

Class edu.jhu.tmaj.servlet.response.impl.FolderResponse extends SuccessResponse implements Serializable

Serialized Fields

externalFolder

ExternalFolder externalFolder

Class edu.jhu.tmaj.servlet.response.impl.FoldersResponse extends SuccessResponse implements Serializable

Serialized Fields

externalFoldersList

java.util.List<E> externalFoldersList

Class edu.jhu.tmaj.servlet.response.impl.GrossDescriptionResponse extends SuccessResponse implements Serializable

Serialized Fields

grossDescription

java.lang.String grossDescription

diagnosis

java.lang.String diagnosis

Class edu.jhu.tmaj.servlet.response.impl.GrossDescriptionWipeResponse extends SuccessResponse implements Serializable

Serialized Fields

totalChecked

int totalChecked

totalUpdated

int totalUpdated

Class edu.jhu.tmaj.servlet.response.impl.HistoryResponse extends SuccessResponse implements Serializable

Serialized Fields

fieldNamesList

java.util.List<E> fieldNamesList

dataList

java.util.List<E> dataList

Class edu.jhu.tmaj.servlet.response.impl.ImageInfoResponse extends SuccessResponse implements Serializable

Serialized Fields

dataString

java.lang.String dataString

Class edu.jhu.tmaj.servlet.response.impl.ImagesDirectoryResponse extends SuccessResponse implements Serializable

Serialized Fields

numberOfImagesWithNoArrayCore

int numberOfImagesWithNoArrayCore

numberOfImagesAlreadyInserted

int numberOfImagesAlreadyInserted

arraySlideID

int arraySlideID

arrayImagesBeanList

java.util.List<E> arrayImagesBeanList

arrayBlockID

int arrayBlockID

Class edu.jhu.tmaj.servlet.response.impl.InitDatabaseResponse extends SuccessResponse implements Serializable

Serialized Fields

message

java.lang.String message

Class edu.jhu.tmaj.servlet.response.impl.IsArrayBlockBlankResponse extends SuccessResponse implements Serializable

Serialized Fields

isArrayBlockBlank

boolean isArrayBlockBlank

numberOfCoresMade

int numberOfCoresMade

Class edu.jhu.tmaj.servlet.response.impl.KeyValueGetResponse extends SuccessResponse implements Serializable

Serialized Fields

value

java.lang.String value

Class edu.jhu.tmaj.servlet.response.impl.LoginResponse extends SuccessResponse implements Serializable

Serialized Fields

userBean

UserBean userBean

Class edu.jhu.tmaj.servlet.response.impl.LookupTableResponse extends SuccessResponse implements Serializable

Serialized Fields

id_lookupRecord

java.util.Map<K,V> id_lookupRecord

Class edu.jhu.tmaj.servlet.response.impl.MachineScoresImportResponse extends SuccessResponse implements Serializable

Serialized Fields

completionMessage

java.lang.String completionMessage

warnings

java.lang.StringBuffer warnings

areWarningsGenerated

boolean areWarningsGenerated

Class edu.jhu.tmaj.servlet.response.impl.MachineScoresInfoResponse extends SuccessResponse implements Serializable

Serialized Fields

dataString

java.lang.String dataString

Class edu.jhu.tmaj.servlet.response.impl.ManyToManyResponse extends SuccessResponse implements Serializable

Serialized Fields

manyToManyBean

ManyToManyBean manyToManyBean

Class edu.jhu.tmaj.servlet.response.impl.MasksResponse extends SuccessResponse implements Serializable

Serialized Fields

maskList

java.util.List<E> maskList

Class edu.jhu.tmaj.servlet.response.impl.MessagesResponse extends SuccessResponse implements Serializable

Serialized Fields

messages

Messages messages

Class edu.jhu.tmaj.servlet.response.impl.MetaDataAddResponse extends SuccessResponse implements Serializable

Serialized Fields

assignedID

int assignedID

Class edu.jhu.tmaj.servlet.response.impl.OriginalTypeResponse extends SuccessResponse implements Serializable

Serialized Fields

typeID

int typeID

wasTypeLookedUp

boolean wasTypeLookedUp

Class edu.jhu.tmaj.servlet.response.impl.QuantityLeftResponse extends SuccessResponse implements Serializable

Serialized Fields

quantityLeft

int quantityLeft

Class edu.jhu.tmaj.servlet.response.impl.RecentSessionGetResponse extends SuccessResponse implements Serializable

Serialized Fields

datedProjectSessionsList

java.util.List<E> datedProjectSessionsList

Class edu.jhu.tmaj.servlet.response.impl.SelectResponse extends SuccessResponse implements Serializable

Serialized Fields

beanList

java.util.List<E> beanList

columnIdentifiers

java.util.List<E> columnIdentifiers

Class edu.jhu.tmaj.servlet.response.impl.SessionDescriptionsResponse extends SuccessResponse implements Serializable

Serialized Fields

listOfMaps

java.util.List<E> listOfMaps

Class edu.jhu.tmaj.servlet.response.impl.ShapesLoadResponse extends SuccessResponse implements Serializable

Serialized Fields

shapeRecordsList

java.util.List<E> shapeRecordsList

Class edu.jhu.tmaj.servlet.response.impl.ShapesSaveResponse extends SuccessResponse implements Serializable

Serialized Fields

drawablesList

java.util.List<E> drawablesList

Class edu.jhu.tmaj.servlet.response.impl.SpecimenIdentifiersResponse extends SuccessResponse implements Serializable

Serialized Fields

record_patientID

java.util.Map<K,V> record_patientID

record_specimenID

java.util.Map<K,V> record_specimenID

Class edu.jhu.tmaj.servlet.response.impl.SurgPathNumberResponse extends SuccessResponse implements Serializable

Serialized Fields

surgPathNumber

java.lang.String surgPathNumber

Class edu.jhu.tmaj.servlet.response.impl.TranslatedRowResponse extends SuccessResponse implements Serializable

Serialized Fields

isSpecimenUpdated

boolean isSpecimenUpdated

isSpecimenInserted

boolean isSpecimenInserted

isPatientUpdated

boolean isPatientUpdated

isPatientInserted

boolean isPatientInserted

Class edu.jhu.tmaj.servlet.response.impl.UpdateResponse extends SuccessResponse implements Serializable

Serialized Fields

bean

JBean bean

Class edu.jhu.tmaj.servlet.response.impl.UsedTissueTypesResponse extends SuccessResponse implements Serializable

Serialized Fields

tissueTypesList

java.util.List<E> tissueTypesList

Class edu.jhu.tmaj.servlet.response.impl.UsersSessionsGetResponse extends SuccessResponse implements Serializable

Serialized Fields

userPermissionsList

java.util.List<E> userPermissionsList

Package edu.jhu.tmaj.util.crypt

Class edu.jhu.tmaj.util.crypt.KeyManagementUtility extends java.lang.Object implements Serializable

Package edu.jhu.tmaj.util.data

Class edu.jhu.tmaj.util.data.Coordinate extends Pair implements Serializable

Class edu.jhu.tmaj.util.data.Messages extends java.lang.Object implements Serializable

Serialized Fields

messagesStringBuffer

java.lang.StringBuffer messagesStringBuffer

areMessages

boolean areMessages

Class edu.jhu.tmaj.util.data.Pair extends java.lang.Object implements Serializable

Serialized Fields

x

int x

y

int y

Class edu.jhu.tmaj.util.data.Position extends Pair implements Serializable

Package edu.jhu.tmaj.util.file

Class edu.jhu.tmaj.util.file.ChecksumUtilImpl extends java.lang.Object implements Serializable

Class edu.jhu.tmaj.util.file.FileUtilImpl extends java.lang.Object implements Serializable

Class edu.jhu.tmaj.util.file.FlatFileSyncerImpl extends java.lang.Object implements Serializable

Serialized Fields

fileUtil

FileUtil fileUtil

Package edu.jhu.tmaj.util.swing

Class edu.jhu.tmaj.util.swing.AbstractTableCellRenderer extends javax.swing.JLabel implements Serializable