edu.jhu.tmaj.beans.dynamic
Class SpecimenBean

java.lang.Object
  edu.jhu.tmaj.beans.JBean
      edu.jhu.tmaj.beans.dynamic.DynamicJBean
          edu.jhu.tmaj.beans.dynamic.SpecimenBean

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable

public final class SpecimenBean
extends DynamicJBean
implements java.io.Serializable

Represents the Specimens table, with the accompaning dynamic table, SpecimenData. A Specimen represents all the tissue that is taken out of a patient during a surgery. It is possible for a patient to have multiple specimens, since some patients have to come back for another surgery. A Specimen can be uniquely identified by knowing the SurgPathNumber and Hospital where the surgery was performed. The SurgPathNumber is the hospital's primary-key for keeping track of specimens. When possible, the SurgPathNumber, any dates, and names of doctors are kept from end-users to protect patient privacy. Note: Users do not generally assign a patient to a Specimen. To be specific, users can not even view the Patient's table. The only time the patient's table is used when the Import application is used to import Specimens. A Hospital and a SurgPathNumber uniquely identify a Specimen.

See Also:

Serialized Form

Field Summary

static DatabaseField	ACCESSION_DATE_FIELD
static DatabaseField	AGE_FIELD
static DatabaseField	ANIMAL_EXPERIMENT_ID_FIELD
static DatabaseField	DATE_SPECIMEN_TAKEN_FIELD
static DatabaseField	FIXATION_ID_FIELD
static DatabaseField	HOSPITAL_ID_FIELD
static DatabaseField	ID_FIELD
static DatabaseField	INPUTLOG_FIELD
static DatabaseField	MARGINS_POSITIVE_FIELD
static DatabaseField	NOTES_FIELD
static DatabaseField	OUTSIDE_RESEARCH_NUMBER_FIELD
static DatabaseField	OUTSIDE_SURG_PATH_NUMBER_FIELD
static DatabaseField	PATHOLOGISTS_FIELD
static DatabaseField	PATIENT_ID_FIELD
static DatabaseField	PHYSICIANS_FIELD
static DatabaseField	PROCEDURE_TYPE_FIELD
static DatabaseField	PROCESSING_FIELD
static DatabaseField	RACE_FIELD
static DatabaseField	SPECIMEN_LIST_FIELD
static DatabaseField	SPECIMEN_TYPE_ID_FIELD
static DatabaseField	SURG_PATH_NUMBER_FIELD
static java.lang.String	SURG_PATH_NUMBER_STRING
static DatabaseField	TUMOR_BANK_NUMBER_FIELD

Fields inherited from class edu.jhu.tmaj.beans.dynamic.DynamicJBean

dynamicMetaData

Fields inherited from class edu.jhu.tmaj.beans.JBean

staticMetaData

Constructor Summary

SpecimenBean(StaticMetaData staticMetaData, DynamicMetaData dynamicMetaData)

Method Summary

(package private) java.lang.String	getDynamicSQL(Search search) Returns a SQL statement that will pull records from the DynamicData table (e.g.
java.lang.String	getDynamicTableName() Returns the name of the Table that contains the DynamicData for this Bean, for example, SpecimenData.
DatabaseField[]	getFieldsArray() Returns an Array of TFields representing the columnnames of this bean.
int	getHospitalID() Returns the Hospital where the surgery was performed to obtain this specimen.
JBean	getNewInstance() Returns a new instance of this bean.
java.lang.String	getSQL(Search search) Returns a SELECT SQL statement given a Search.
java.lang.String	getSurgPathNumber() Returns the unique identifier the hospital assigned to this specimen.
DatabaseTable	getTable()
DatabaseField	getTypeField() Returns the TField column where the type of this DynamicBean is put.
void	insert() Performs an INSERT operation on the database with the data in this bean.

Methods inherited from class edu.jhu.tmaj.beans.dynamic.DynamicJBean

addDynamicValue, createFromSwingMap, getBeanList, getColumnIdentifiers, getDynamicBaseSQL, getDynamicColumnIdentifiers, getDynamicMetaData, getEnumerations, getSwingHash, getSwingToBeanObject, getTypeID, isEnumerated, setTypeID, syncDynamicData, update

Methods inherited from class edu.jhu.tmaj.beans.JBean

compareTo, createFromResultSet, delete, equals, getAllStaticColumnIdentifiers, getBaseSQL, getBeanInDatabase, getBeanList, getClassForType, getDateField, getDefaultBeanObjectForType, getDefaultSwingObjectForType, getDoubleField, getFieldValue, getID_Bean_Map, getID, getIntegerField, getNonNullString, getPrimaryKeyField, getPrimaryKeyName, getSelectResponse, getStaticMetaData, getStringField, getTableName, getUserBean, getWhereClause, hashCode, setDoubleField, setID, setIntegerField, setUserBean, toString, verify

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

SURG_PATH_NUMBER_STRING

public static final java.lang.String SURG_PATH_NUMBER_STRING

See Also:

Constant Field Values

ID_FIELD

public static final DatabaseField ID_FIELD

SURG_PATH_NUMBER_FIELD

public static final DatabaseField SURG_PATH_NUMBER_FIELD

HOSPITAL_ID_FIELD

public static final DatabaseField HOSPITAL_ID_FIELD

SPECIMEN_TYPE_ID_FIELD

public static final DatabaseField SPECIMEN_TYPE_ID_FIELD

PATIENT_ID_FIELD

public static final DatabaseField PATIENT_ID_FIELD

AGE_FIELD

public static final DatabaseField AGE_FIELD

RACE_FIELD

public static final DatabaseField RACE_FIELD

ANIMAL_EXPERIMENT_ID_FIELD

public static final DatabaseField ANIMAL_EXPERIMENT_ID_FIELD

OUTSIDE_SURG_PATH_NUMBER_FIELD

public static final DatabaseField OUTSIDE_SURG_PATH_NUMBER_FIELD

OUTSIDE_RESEARCH_NUMBER_FIELD

public static final DatabaseField OUTSIDE_RESEARCH_NUMBER_FIELD

SPECIMEN_LIST_FIELD

public static final DatabaseField SPECIMEN_LIST_FIELD

ACCESSION_DATE_FIELD

public static final DatabaseField ACCESSION_DATE_FIELD

DATE_SPECIMEN_TAKEN_FIELD

public static final DatabaseField DATE_SPECIMEN_TAKEN_FIELD

PATHOLOGISTS_FIELD

public static final DatabaseField PATHOLOGISTS_FIELD

PHYSICIANS_FIELD

public static final DatabaseField PHYSICIANS_FIELD

NOTES_FIELD

public static final DatabaseField NOTES_FIELD

TUMOR_BANK_NUMBER_FIELD

public static final DatabaseField TUMOR_BANK_NUMBER_FIELD

FIXATION_ID_FIELD

public static final DatabaseField FIXATION_ID_FIELD

MARGINS_POSITIVE_FIELD

public static final DatabaseField MARGINS_POSITIVE_FIELD

PROCEDURE_TYPE_FIELD

public static final DatabaseField PROCEDURE_TYPE_FIELD

PROCESSING_FIELD

public static final DatabaseField PROCESSING_FIELD

INPUTLOG_FIELD

public static final DatabaseField INPUTLOG_FIELD

Constructor Detail

SpecimenBean

public SpecimenBean(StaticMetaData staticMetaData,
                    DynamicMetaData dynamicMetaData)

Method Detail

getHospitalID

public int getHospitalID()

Returns the Hospital where the surgery was performed to obtain this specimen.

getSurgPathNumber

public java.lang.String getSurgPathNumber()

Returns the unique identifier the hospital assigned to this specimen.

getTypeField

public DatabaseField getTypeField()

Description copied from class: DynamicJBean

Returns the TField column where the type of this DynamicBean is put.

Specified by:

getTypeField in class DynamicJBean

getTable

public DatabaseTable getTable()

Specified by:

getTable in class JBean

getNewInstance

public JBean getNewInstance()

Description copied from class: JBean

Returns a new instance of this bean.

Specified by:

getNewInstance in class JBean

getFieldsArray

public DatabaseField[] getFieldsArray()

Description copied from class: JBean

Returns an Array of TFields representing the columnnames of this bean.

Specified by:

getFieldsArray in class JBean

getDynamicTableName

public java.lang.String getDynamicTableName()

Description copied from class: DynamicJBean

Returns the name of the Table that contains the DynamicData for this Bean, for example, SpecimenData.

Specified by:

getDynamicTableName in class DynamicJBean

getDynamicSQL

java.lang.String getDynamicSQL(Search search)

Description copied from class: DynamicJBean

Returns a SQL statement that will pull records from the DynamicData table (e.g. SpecimenData)

Overrides:

getDynamicSQL in class DynamicJBean

getSQL

public java.lang.String getSQL(Search search)

Description copied from class: JBean

Returns a SELECT SQL statement given a Search.

Overrides:

getSQL in class JBean

insert

public void insert()
            throws java.sql.SQLException

Description copied from class: DynamicJBean

Performs an INSERT operation on the database with the data in this bean. In addition, the DynamicData table (e.g. SpecimenData) is updated with the dynamic Data.

Overrides:

insert in class DynamicJBean

Throws:

java.sql.SQLException